MmuEX6055215 @ mm9
Exon Skipping
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82204334-82206471:-
Coord C1 exon
chr15:82206223-82206471
Coord A exon
chr15:82204728-82204899
Coord C2 exon
chr15:82204334-82204486
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTCCTTGCCTACAGCTG
3' ss Score
9.3
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
GTAGCTGGAGTTAGGATTGAGAAGTGTTTCCAAAGAAACCCAAAGAGCAGCCGGGCAGCCATGAGACTGCCGACCGGGGCTGAACTGTGGCCCATAGCCATATTCACGGTCATCTTCCTGATTCTGGTGAACCTGATGCACTGGCGCCAGCGCTGGACTGCCCACTACCCTCCAGGCCCTATGCCGTGGCCTGTGCTTGGGAACCTGCTGCACATGGACTTCCAGAATATGCCAGCAGGCTTCCAAAAG
Seq A exon
CTGCGGGGTCGCTATGGGGACCTGTTCAGCCTACAGCTGGCCTCTGAGTCAGTGGTTGTACTAAATGGGCTGACGGCCCTGCGAGAGGCACTGGTGAAACACAGCGAGGACACTGCTGACCGGCCACCGCTGCATTTCAATGACCTGCTGGGCTTTGGACCACGCTCTCAAG
Seq C2 exon
GTATAGTCCTAGCACGGTATGGGCCTGCCTGGCGTCAGCAGCGGCGCTTCTCTGTGTCTACCATGCACCACTTTGGCCTGGGCAAGAAGTCACTGGAGCAGTGGGTGACTGAGGAGGCCAGATGCCTCTGTGCCGCCTTCGCTGACCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATAGCCATATTCACGGT
R:
CTCCAGTGACTTCTTGCCCAG
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: