BtaEX0000957 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6R9F1]
Coordinates
chr5:113611637-113613623:-
Coord C1 exon
chr5:113613212-113613623
Coord A exon
chr5:113612323-113612494
Coord C2 exon
chr5:113611637-113611789
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTCGACCTTTGGCCTGCAGTTG
3' ss Score
6.41
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AGTGGCCGCCCGTGCGCCTCACTCTCCTTGACCCCTCTCTGTACTCTCGGGCAACACAATCTCCCCGACAAGACAGCTCAGGGCAGAGGCCAAAGGCCGGTCCTCCGCTCCCTTTATACAGAGGCCCCGGACTGGTGGAGCCCCGGAGGTGGAGTGAGAGTGCCCTGCTGGCCTGGTCCTGGGTGCCGGCGTGGTGAGGAACCCAGCGCTCGAAGAGGCAGCCATGGGGCTGCTGTCTGGGGACACGCTGGGGCCCCTGGCCGTGGCCCTGCTCATCTTCTTGCTCTTGCTGGACCTGATGCACCGGCGCTCACGTTGGGCCCCACGATACCCACCAGGCCCCATGCCGCTGCCGGTGCTGGGCAATCTGCTGCAGGTGGACTTCGAGGACCCACGTCCCAGCTTTAACCAG
Seq A exon
TTGCGGCGCCGTTTCGGGAACGTGTTCAGCCTGCAGCAGGTCTGGACACCGGTAGTCGTGCTCAACGGGCTGGCGGCTGTGCGCGAGGCGCTGGTGTACCGCAGTCAGGACACTGCCGACCGTCCACCTCAGGCACTCTACAAGCACTTGGGTTTCGGGCCGCGCGCCGAAG
Seq C2 exon
GAGTGATCCTGGCGCGTTATGGCAACGCCTGGCGTGAGCAGCGGCGTTTCTCCCTATCCACCCTGCGCAACTTCGGCCTGGGGAAGAAGTCACTGGAGCAGTGGGTGACCGAGGAGGCCTCGTGCCTCTGTGCCGCCTTCGCCGACCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026502_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=41.3)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCTGCTCATCTTCTTG
R:
TCCAGTGACTTCTTCCCCAGG
Band lengths:
247-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development