MmuEX6055215 @ mm10
Exon Skipping
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82373904-82376041:-
Coord C1 exon
chr15:82375793-82376041
Coord A exon
chr15:82374298-82374469
Coord C2 exon
chr15:82373904-82374056
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTCCTTGCCTACAGCTG
3' ss Score
9.3
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
GTAGCTGGAGTTAGGATTGAGAAGTGTTTCCAAAGAAACCCAAAGAGCAGCCGGGCAGCCATGAGACTGCCGACCGGGGCTGAACTGTGGCCCATAGCCATATTCACGGTCATCTTCCTGATTCTGGTGAACCTGATGCACTGGCGCCAGCGCTGGACTGCCCACTACCCTCCAGGCCCTATGCCGTGGCCTGTGCTTGGGAACCTGCTGCACATGGACTTCCAGAATATGCCAGCAGGCTTCCAAAAG
Seq A exon
CTGCGGGGTCGCTATGGGGACCTGTTCAGCCTACAGCTGGCCTCTGAGTCAGTGGTTGTACTAAATGGGCTGACGGCCCTGCGAGAGGCACTGGTGAAACACAGCGAGGACACTGCTGACCGGCCACCGCTGCATTTCAATGACCTGCTGGGCTTTGGACCACGCTCTCAAG
Seq C2 exon
GTATAGTCCTAGCACGGTATGGGCCTGCCTGGCGTCAGCAGCGGCGCTTCTCTGTGTCTACCATGCACCACTTTGGCCTGGGCAAGAAGTCACTGGAGCAGTGGGTGACTGAGGAGGCCAGATGCCTCTGTGCCGCCTTCGCTGACCATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-'8-3,'8-2,9-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATAGCCATATTCACGGT
R:
CTCCAGTGACTTCTTGCCCAG
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types