RnoEX0025891 @ rn6
Exon Skipping
Gene
ENSRNOG00000032261 | Cyp2d4
Description
cytochrome P450, family 2, subfamily d, polypeptide 4 [Source:RGD Symbol;Acc:620640]
Coordinates
chr7:123601719-123603967:-
Coord C1 exon
chr7:123603719-123603967
Coord A exon
chr7:123602097-123602268
Coord C2 exon
chr7:123601719-123601871
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCCTCACTCCCTGCCTACAGCTG
3' ss Score
10.08
5' ss Seq
AAGGCAAAT
5' ss Score
1.13
Exon sequences
Seq C1 exon
GTGGCTGTAGTCGGGATTGAGAGGTGTTTCCAAAGAAACCCAAAGAGCAGCAGGGCAGCCATGAGGATGCCGACGGGGTCTGAACTGTGGCCCATAGCCATATTCACGATCATCTTCCTGCTTCTGGTGGACCTGATGCACAGGCGCCAGCGCTGGACTTCTCGCTACCCTCCGGGCCCTGTGCCCTGGCCTGTGCTGGGCAACCTGCTGCAGATAGACTTCCAGAATATGCCAGCGGGCTTTCAAAAG
Seq A exon
CTGAGATGTCGCTTTGGGGACCTGTTCAGCTTACAGCTGGCCTTTGAGTCGGTGGTTGTACTGAATGGGCTGCCAGCCCTGCGAGAGGCACTGGTGAAATACAGCGAGGACACCGCTGACCGGCCACCGCTGCATTTCAATGACCAGTCGGGCTTTGGACCACGCTCTCAAG
Seq C2 exon
GTGTGGTCCTCGCGAGGTATGGACCTGCCTGGCGTCAGCAGCGGCGCTTCTCTGTGTCCACCTTCCGTCACTTTGGCCTGGGCAAGAAGTCACTGGAGCAGTGGGTGACAGAGGAGGCCAGATGCCTCTGTGCTGCCTTCGCTGACCATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032261_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAACTGTGGCCCATAGC
R:
CCAAAGTGACGGAAGGTGGAC
Band lengths:
248-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]