MmuEX6056170 @ mm9
Exon Skipping
Gene
ENSMUSG00000022483 | Col2a1
Description
collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
Coordinates
chr15:97815994-97816792:-
Coord C1 exon
chr15:97816739-97816792
Coord A exon
chr15:97816294-97816347
Coord C2 exon
chr15:97815994-97816047
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCCTCTGCCCTGTAGGGT
3' ss Score
10.61
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GGCGAGCCTGGCAAAGCTGGTGAGAAGGGTCTGGCTGGCGCTCCTGGTCTGAGA
Seq A exon
GGTCTTCCTGGAAAAGACGGTGAGACGGGAGCCGCAGGACCCCCCGGCCCCAGT
Seq C2 exon
GGACCTGCTGGTGAACGAGGCGAGCAGGGCGCTCCTGGACCATCAGGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022483-'38-34,'38-33,39-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(5.0=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAAGCTGGTGAGAAGG
R:
CTGATGGTCCAGGAGCGCC
Band lengths:
93-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: