MmuEX6056800 @ mm10
Exon Skipping
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102208753-102215605:+
Coord C1 exon
chr15:102208753-102208876
Coord A exon
chr15:102209155-102209273
Coord C2 exon
chr15:102212596-102215605
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGCCCTTGGACCAGGTG
3' ss Score
7.17
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATTCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTACCACCTCAAGAGGCACGTCCTAATCCACACTG
Seq A exon
GTGAGAAACCATTTGAGTGTGATGTCTGTGATATGCGTTTCATCCAGAAGTACCATCTCGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
Seq C2 exon
TGTTTTTCTCGGACAGACCGATTACTCAGACACAAACGGATGTGCCAAGGATGCCAGTCCAAGACTTCTGAAGGGCAGTTTTCTCTATAGGCACAAGGGGCCCTAGGTGGTGGGAGTGCTGAGGAGAGTCTCTGGAAGAGCATAGCCCTGTGTTCTGACGGTCCCACCACCACTCCCTCTGAACCTGTCCCCCTTCCTAGAGGACCAGCCCCAGGTTAGCAGAAGAGCGTCTGAGGACATCGGCTCCAAAGCCCCAACTCTGTAACCAGTCTGAGGCTATGAGTATCCCAGGGACACCTGCAGCATTCTTGGGCAAGGGAGCTGGTCCTTGAACCTCAGCTGAGATGAGGTGGGGACTCAAAGGTGCAGGACCAAGACTGAAATGTTCCCACAACCTTGGACTGGAACTGGCAGCTAAAATGGAAAGGACCGGGGAGGGGTTTTTGTTGGTTCTGCTTTTGTTTTTGTTTATCCAAAAGCAATTTAAACAGGTAAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897-'15-20,'15-19,23-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTCCTAATCCACACTG
R:
GACGCTCTTCTGCTAACCTGG
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types