MmuEX6056800 @ mm9
Exon Skipping
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102039184-102046036:+
Coord C1 exon
chr15:102039184-102039307
Coord A exon
chr15:102039586-102039704
Coord C2 exon
chr15:102043027-102046036
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGCCCTTGGACCAGGTG
3' ss Score
7.17
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATTCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTACCACCTCAAGAGGCACGTCCTAATCCACACTG
Seq A exon
GTGAGAAACCATTTGAGTGTGATGTCTGTGATATGCGTTTCATCCAGAAGTACCATCTCGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
Seq C2 exon
TGTTTTTCTCGGACAGACCGATTACTCAGACACAAACGGATGTGCCAAGGATGCCAGTCCAAGACTTCTGAAGGGCAGTTTTCTCTATAGGCACAAGGGGCCCTAGGTGGTGGGAGTGCTGAGGAGAGTCTCTGGAAGAGCATAGCCCTGTGTTCTGACGGTCCCACCACCACTCCCTCTGAACCTGTCCCCCTTCCTAGAGGACCAGCCCCAGGTTAGCAGAAGAGCGTCTGAGGACATCGGCTCCAAAGCCCCAACTCTGTAACCAGTCTGAGGCTATGAGTATCCCAGGGACACCTGCAGCATTCTTGGGCAAGGGAGCTGGTCCTTGAACCTCAGCTGAGATGAGGTGGGGACTCAAAGGTGCAGGACCAAGACTGAAATGTTCCCACAACCTTGGACTGGAACTGGCAGCTAAAATGGAAAGGACCGGGGAGGGGTTTTTGTTGGTTCTGCTTTTGTTTTTGTTTATCCAAAAGCAATTTAAACAGGTAAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897-'15-16,'15-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(71.1=76.2),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
PF127602=Zn_Tnp_IS1595=PD(26.7=30.0),PF134651=zf-H2C2_2=PD(57.7=37.5),PF0172213=BolA=PD(61.7=72.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTCCTAATCCACACTG
R:
GACGCTCTTCTGCTAACCTGG
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: