DreEX6037679 @ danRer10
Exon Skipping
Gene
ENSDARG00000055106 | znf148
Description
zinc finger protein 148 [Source:ZFIN;Acc:ZDB-GENE-030131-8769]
Coordinates
chr9:38824381-38831431:+
Coord C1 exon
chr9:38824381-38824464
Coord A exon
chr9:38824625-38824743
Coord C2 exon
chr9:38825614-38831431
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTGTCATTTAACTTTTGTAGGAG
3' ss Score
8.3
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAAAAGCCTTTCCAGTGCAATCAATGCGACATGCGCTTTATTCAGAAGTACCTGCTTCAGAGACATGAGAAGATCCATACAG
Seq A exon
GAGAAAAACCCTTTCGCTGTGATGAGTGTGGAATGAAATTTATACAGAAGTACCACATGGAGAGACATAAGAGGACACACAGTGGAGAAAAGCCTTATCAGTGTGACTATTGCCATCAG
Seq C2 exon
TTCTTCTCCAGAACTGACAGAGTACTGAAGCACAGAAGAATGTGCCATGAGAATAAAGACAGGAAGGTGCAGAAAACAGCTGTCAAAGATAGTCCTCTTCGCACTCCAGAGAACTTGGGCTTCTCTTTTCCTGCTAAGGATTGCACCCTTCCCAAGAAGAAACGTCAGAAGACCTCTGATAAAAGTCGGGCCTCAATCACAAACCCTGCTGTTGATAAAGTGGTTGAAGCTGATATGGATGAAAAGACGGAAGATCGACTTGCCAAAAGTGAGTGTCTTCCTCTTTATGCTGTAGCCACCAAGGTGAAGGATGAATATGTTGTGACCGATTATTCTGTGGAGCTCCCTGATTCCCCACCTGGCAGCAGGCATCTTGCAGGAGAGGAATCCAACGATGAAATTATCAGTCCTCCAAAACTAGTCTTAAAGAAAATTGCTAGCAGAAGAGGTTTCAAACAGCAGGCTCTAGAGCAGTCCCAGAGTCTCTCTCCATTGTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055106-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.144 C2=0.483
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PD(27.9=41.4),PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAGCCTTTCCAGTGCA
R:
TTCTTGGGAAGGGTGCAATCC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]