MmuEX6062056 @ mm10
Exon Skipping
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33468100-33503903:+
Coord C1 exon
chr16:33468100-33468183
Coord A exon
chr16:33495345-33495463
Coord C2 exon
chr16:33495746-33503903
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAAATCATGTACTAGGTG
3' ss Score
6.05
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCGAAAAACCGTTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACACGAGAAGATCCATACCG
Seq A exon
GTGAAAAACCATTTCGCTGTGATGAATGTGGTATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTATCAGTGTGAATACTGCTTACAG
Seq C2 exon
TATTTTTCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAATCACGACAAAAAACTAAACAGATGTGCCATCAAAGGTGGCCTTCTGACATCAGAGGAAGATTCTGGCTTTTCTACATCACCAAAAGATAATTCACTGCCAAAAAAGAAAAGGCAAAAAACTGAGAAGAAATCGTCTGGGATGGACAAGGAGAGTGTGCTGGACAAATCTGACCTGAAGAAAGACAAGAACGATTACCTGCCTCTCTACTCGTCGAGCACTAAAGTAAAGGATGAGTACATGGTGGCAGAGTATGCTGTTGAGATGCCACACTCATCAGTGGGAGGCTCTCACCTAGAAGATGCATCTGGAGAAATACACCCACCCAAGTTGGTTCTCAAAAAAATCAATAGTAAGAGAAGTCTGAAGCAGCCCTTGGAGCAAAGTCAAACCATTTCACCCCTATCCAGCTATGAAGACAGCAAAGTTTCCAAGTACGCTTTTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-'34-25,'34-24,36-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.620
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTTCAGAGACACGAGA
R:
TGTCCAGCACACTCTCCTTGT
Band lengths:
250-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types