RnoEX0101062 @ rn6
Exon Skipping
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70514750-70539762:-
Coord C1 exon
chr11:70539679-70539762
Coord A exon
chr11:70516813-70516931
Coord C2 exon
chr11:70514750-70516547
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAAATCACATACTAGGTG
3' ss Score
5.05
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCGAAAAACCGTTTCAATGTAGTCAGTGTGACATGCGTTTCATACAGAAGTACCTGCTCCAGAGACACGAGAAGATCCATACTG
Seq A exon
GTGAAAAACCATTTCGCTGCGATGAGTGTGGAATGAGATTCATACAGAAATATCACATGGAAAGGCACAAAAGAACTCACAGTGGGGAGAAGCCTTACCAGTGTGAATACTGCTTACAG
Seq C2 exon
TATTTTTCCAGAACAGATCGTGTATTGAAACATAAACGTATGTGCCATGAAAATCACGACAAAAAACTAAACAGATGTGCCATCAAAGGTGGCCTTCTGACATCAGAGGAAGATTCTGGCTTTTCTACGTCACCAAAAGATAATTCACTGCCAAAAAAGAAAAGGCAAAAACCTGAGAAGAAATCGTCCGGGATGGACAAGGAGAGTGTCCTGGACAAATCTGACACGAAGAAAGACAGAAACGATTACCTGCCCCTCTACTCGTCCAGCACTAAAGTGAAGGACGAGTACATGGTGGCGGAGTACGCTGTTGAAATGCCCCATTCCTCAGTGGGAGGGTCCCATTTAGAAGACGCTTCTGGAGAGATACACCCACCCAAGTTGGTTCTCAAAAAAATCAATAGTAAGAGAAGTCTGAAACAGCCCCTGGAGCAAAGTCAAACCATTTCACCCCTATCCACTTACGAAGACAGCAAAGTTTCCAAGTATGCATTTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789-'22-18,'22-17,24-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.618
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCTCCAGAGACACGAG
R:
ACACTCTCCTTGTCCATCCCG
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]