GgaEX0018108 @ galGal4
Exon Skipping
Gene
ENSGALG00000012049 | ZNF148
Description
zinc finger protein 148 [Source:HGNC Symbol;Acc:HGNC:12933]
Coordinates
chr7:27543247-27550821:-
Coord C1 exon
chr7:27550738-27550821
Coord A exon
chr7:27545166-27545284
Coord C2 exon
chr7:27543247-27544842
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTTTTTTATCAGGTG
3' ss Score
10.11
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAAAAACCATTTCAGTGCAGTCAGTGCGACATGCGTTTCATACAGAAGTACCTGCTACAGAGGCATGAGAAGATTCATACTG
Seq A exon
GTGAGAAGCCATTTCGTTGTGATGAATGTGGTATGAGGTTTATTCAGAAGTATCACATGGAAAGGCACAAAAGAACTCACAGTGGAGAGAAGCCTTACCAGTGCGAGTATTGTTTGCAG
Seq C2 exon
TATTTCTCCAGGACTGATCGTGTGCTGAAACATAAACGTATGTGCCATGAGAACCGTGACAAGAAACCGAACAGAAGTGCCACCAAAGTTGGCTTTTTGCCATCGGAGGAAGATTCTGGTTTCTCTACGCCTATGAAAGACAGCTCCTTGCCAAAGAAGAAAAGGCAGAAAACAGAGAAAACAAAATCTGGAGATAAGGACGGTACGGATAAATCAGAACAGAAGAAGGACAAAAATGACTATTTGCCTTTGTATTCTGCTAGCACGAAAGTAAAAGATGAATATATGGTAGCAGAATATGCTGTCGAGATGCCACATTCTTCTGTCAGTGGGTCGCACTTAGAAGAAGCAAATTCTGGGGAAATACACCCACCCAAGCTCGTTCTCAAGAAAGTTAACAGCAAGAGGAGTCTTAAACAGCCACTCGAGCAAAGTCAAAGCATTTCACCTTTATCTACGTATGAAGACAGCAAGGTTTCAAAGTATACCTTTGATCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012049-'16-9,'16-8,18-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.635
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=51.7),PF134651=zf-H2C2_2=PU(38.5=34.5)
A:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
C2:
PF134651=zf-H2C2_2=PD(11.5=0.6)
Main Skipping Isoform:
ENSGALT00000019681fB2142
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTACAGAGGCATGAGA
R:
TCCGTACCGTCCTTATCTCCA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]