MmuEX6057552 @ mm10
Exon Skipping
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23362803-23369000:-
Coord C1 exon
chr13:23368857-23369000
Coord A exon
chr13:23368120-23368205
Coord C2 exon
chr13:23362803-23362875
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGCTGCTTTTTTCCTCTAGGAG
3' ss Score
11.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGTGCCGCCCTGGGCGGCGGAGTAAGCGTTCAGCGGGTCCTCGAGGTCCTTGGCCGTGAGAGGGGTCCGGGCCAGGCGCGGCGCCCTTCTTGTCGCTGTCAACGAAAAGTTGGGAGGAGAAACCTGTGAGACTGTCCTGGAG
Seq A exon
GAGAGGGAAGAATTAAATATTATGAGTACTTCTGGATTAGAGACCTTGTGGATCTGAAAAAAATAAATCGTTGGGTTCTTGTTAAG
Seq C2 exon
AAAGCTGTTTTTTTTAATTTTGATTTTCTCAAGACATAAAGTGAAGGCTGCTTTTCATCTGTCTGCACTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351-'1-2,'1-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCCTCGAGGTCCTTGG
R:
GCAGACAGATGAAAAGCAGCC
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types