MmuEX6057552 @ mm9
Exon Skipping
Gene
ENSMUSG00000046351 | Zfp322a
Description
zinc finger protein 322A [Source:MGI Symbol;Acc:MGI:2442566]
Coordinates
chr13:23454672-23461077:-
Coord C1 exon
chr13:23461004-23461077
Coord A exon
chr13:23459989-23460074
Coord C2 exon
chr13:23454672-23454744
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGCTGCTTTTTTCCTCTAGGAG
3' ss Score
11.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCTACGCCTCCCTGTCCTTGCTGGTGAGAGCGGTTTGTCTTGGCCTTGTGGTGTGCGGGGACCGCTTCTCCAG
Seq A exon
GAGAGGGAAGAATTAAATATTATGAGTACTTCTGGATTAGAGACCTTGTGGATCTGAAAAAAATAAATCGTTGGGTTCTTGTTAAG
Seq C2 exon
AAAGCTGTTTTTTTTAATTTTGATTTTCTCAAGACATAAAGTGAAGGCTGCTTTTCATCTGTCTGCACTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046351-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGCCTCCCTGTCCTT
R:
TAGTGCAGACAGATGAAAAGCAGC
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: