MmuEX6064158 @ mm10
Exon Skipping
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20588509-20591421:+
Coord C1 exon
chr9:20588509-20588635
Coord A exon
chr9:20590813-20590884
Coord C2 exon
chr9:20591339-20591421
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATACACTTTCCATGTATAAGGAT
3' ss Score
2.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCTCAGCAG
Seq A exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAAGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq C2 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCACCATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAATACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192-'1-10,'1-7,8-10=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.321
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGCTGTGGACTTCACC
R:
CACTGGAAGTCTGTCCCCTCA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types