RnoEX6034721 @ rn6
Exon Skipping
Gene
ENSRNOG00000020356 | Zfp846
Description
zinc finger protein 846 [Source:RGD Symbol;Acc:1564241]
Coordinates
chr8:21611980-21614992:+
Coord C1 exon
chr8:21611980-21612106
Coord A exon
chr8:21614395-21614466
Coord C2 exon
chr8:21614910-21614992
Length
72 bp
Sequences
Splice sites
3' ss Seq
TATACTTTGCCATGGATAAGGAT
3' ss Score
0.3
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAATTACCAGAACCTGGCCTCAGCAG
Seq A exon
GATGTGAGGTCATCAAACCCAGTCTGATCTCCTGGTTGGAGGAAGAGGATTTGCACAGAGAAGATCTCCAAG
Seq C2 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCAACATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAGTACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020356-'2-4,'2-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.250
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGCTGTGGACTTCACC
R:
CACTGGAAGTCTGTCCCCTCA
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]