MmuEX6069404 @ mm10
Exon Skipping
Gene
ENSMUSG00000058398 | Prss43
Description
protease, serine 43 [Source:MGI Symbol;Acc:MGI:2684822]
Coordinates
chr9:110827756-110829545:+
Coord C1 exon
chr9:110827756-110827915
Coord A exon
chr9:110828523-110828785
Coord C2 exon
chr9:110829385-110829545
Length
263 bp
Sequences
Splice sites
3' ss Seq
GTCCCATGCCATCTTTGCAGGCA
3' ss Score
8.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACACTTGCGGCCATAGAATTACAGAGGTAGATCCTGGAAGTTTATCTGCAGGGAGGAAGTGGCCTTGGCAGGTGAGTCTGCAGAGTCAAAATGAGCATGTTTGTGGAGGCTCCCTCATCAGCCACCGATGGGTGTTGACTGCGGCCCACTGCATATATGA
Seq A exon
GCAGGAGGAGTACATGGTGATGTTGGGTGACGACATGCTGCATTCTGAATCTGAAAGTGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACTTTGACATTCAAACCATGAGGAATGACATTGCCCTTGCTCTGCTGTACTTCCCCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCCTTCCCGAAGAGCCCTTCCGAGTGAAAAACGGGACAGTGTGCTGGGTGACTGGCTGGGGCCAACAGAACGAAATTG
Seq C2 exon
ATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTTCCAGAGACAGCTGGGGACATCGAAAAACCTAGTGATTAAAGGGATGATCTGCGGTCTGCAAGACTCAGGACAGAGTCTTTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058398-'5-10,'5-2,8-10=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=79.6)
A:
PF0008921=Trypsin=FE(38.1=100)
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCATAGAATTACAGAGGT
R:
ACTCTGTCCTGAGTCTTGCAGA
Band lengths:
306-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types