MmuEX6069404 @ mm9
Exon Skipping
Gene
ENSMUSG00000058398 | Prss43
Description
protease, serine, 43 [Source:MGI Symbol;Acc:MGI:2684822]
Coordinates
chr9:110730260-110732049:+
Coord C1 exon
chr9:110730260-110730419
Coord A exon
chr9:110731027-110731289
Coord C2 exon
chr9:110731889-110732049
Length
263 bp
Sequences
Splice sites
3' ss Seq
GTCCCATGCCATCTTTGCAGGCA
3' ss Score
8.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACACTTGCGGCCATAGAATTACAGAGGTAGATCCTGGAAGTTTATCTGCAGGGAGGAAGTGGCCTTGGCAGGTGAGTCTGCAGAGTCAAAATGAGCATGTTTGTGGAGGCTCCCTCATCAGCCACCGATGGGTGTTGACTGCGGCCCACTGCATATATGA
Seq A exon
GCAGGAGGAGTACATGGTGATGTTGGGTGACGACATGCTGCATTCTGAATCTGAAAGTGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACTTTGACATTCAAACCATGAGGAATGACATTGCCCTTGCTCTGCTGTACTTCCCCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCCTTCCCGAAGAGCCCTTCCGAGTGAAAAACGGGACAGTGTGCTGGGTGACTGGCTGGGGCCAACAGAACGAAATTG
Seq C2 exon
ATGCAGGGTTTGCATCCATTCTCCTCCAGGAGGTTCAGCAACGCATTCTCCTCCAGAAGCACTGTAACACGCTGTTCCAGAGACAGCTGGGGACATCGAAAAACCTAGTGATTAAAGGGATGATCTGCGGTCTGCAAGACTCAGGACAGAGTCTTTGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058398-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=79.6)
A:
PF0008921=Trypsin=FE(38.1=100)
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCCATAGAATTACAGAGGT
R:
ACTCTGTCCTGAGTCTTGCAGA
Band lengths:
306-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: