HsaEX1029718 @ hg38
Exon Skipping
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46754488-46756629:-
Coord C1 exon
chr3:46756042-46756629
Coord A exon
chr3:46755410-46755672
Coord C2 exon
chr3:46754488-46754648
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCATCTTTTCTCTCAACAGTAA
3' ss Score
9.41
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AATTCCAGAAACTTCTGTAGCTCCAGGGTCTCCAGCGACCGCAGGGCCTCCAGGATCCTGGGTTACTTCAGCATCTACAGTGGGAGAAGCCTTGGAATCCGACGGAATCTCTGACCTTGGAAGGCAGTTTTCTCAGGGTATTGTTTCTGGTGCTAGATCTGTCCTGGCCTGCGGGGTAGGTCAAAGGGGACACAGCCTGGCTCAGGGAGGTTGAGGGTCAGACCCTGACCTAGATGATTTGAGAGAGAGGATAGATAACCCGCCTCCGCCCTGGGCAGCCTGGTGGGGTGGTGGGAAGGTAGTGGCTTCACTTCCAGTCCCCTCTCTTTACTGAGCCCACCAGCCTGTGGCCACCGTGTTTCAAGGATGATTGGAGGATTGCCAGCCCCAAACAAGAAGTGGCCCTGGCAGGTGAGCCTGCAGACCAGCAACATACACCACTGCGGAGGCTCCCTCATCGACAGGCGCTGGGTGCTCACTGCCGCCCACTGTGTCTTTAG
Seq A exon
TAATTTGGAATACAAGGTGAAGCTGGGAGACCCTGACTTGCATGCTGGTTCCAAAGAGGCACTGGTGATCCCAGTTTGAGACATCATTTTTCCTAGCAATTTTGATTTTGCCACTTTGACAAGCGACATTGCCCTTGCTCTGCTCGCCTACTCTGTGAATTATTCCTCACATATCCAGCCTGCGTGCCTCCCCGAAAAGCTTTTTGAAGTGGAAGCTGGGACAGAGTGCTGGGTGACTGGATGGGGCCAAGTGTCAGAGAGTG
Seq C2 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549-'8-5,'8-4,9-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCGTGTTTCAAGGATGA
R:
AGGCATCCTTCCCTTGGTCAT
Band lengths:
307-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains