HsaEX1029715 @ hg38
Exon Skipping
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46754488-46812574:-
Coord C1 exon
chr3:46812222-46812574
Coord A exon
chr3:46756042-46756629
Coord C2 exon
chr3:46754488-46754648
Length
588 bp
Sequences
Splice sites
3' ss Seq
CGGGTCCCCGTCTTCACCAGGTG
3' ss Score
9.53
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GCTCCAAGTTGCCGCCAGAACCCATGGCCGGCGTGGAAACCGCTGCGAGGCGGCGCCACGACGGAGGCTGAGGTCGCCGGCAGTATCCATGGCGTCCCAGAGCGGCAGCTCCCTGGGGCTCCTGGCCTGGTTCTTGCTTCTTCAGCCATGGCTCGAAGAGGCCCGGGCAGGCAGGGTGGGTGCGCAGGGAGGCGTAGCACTGCTCTTCCCCTCCGCGCTCCCCTCAGGGCCAGGCGGCCAGGACCCCGGAGCGAGCGGATGGGAGCCGCCACCTGTAGGGGCTCCAGGATCCCCAGCGGCCCCCCAGTCCAGGGGGAACGCAGTGCGCCCCGCTTCGGTGTTACTTCCCTCAG
Seq A exon
GTGAGCCATACCGACCCGAGGAGGATTCCAGAATGACCCCGGCAAGCCCAGAAGCCCGGACGTCTCCTGTGCACCCGAAATTCCCCAAAATTCCAGAAACTTCTGTAGCTCCAGGGTCTCCAGCGACCGCAGGGCCTCCAGGATCCTGGGTTACTTCAGCATCTACAGTGGGAGAAGCCTTGGAATCCGACGGAATCTCTGACCTTGGAAGGCAGTTTTCTCAGGGTATTGTTTCTGGTGCTAGATCTGTCCTGGCCTGCGGGGTAGGTCAAAGGGGACACAGCCTGGCTCAGGGAGGTTGAGGGTCAGACCCTGACCTAGATGATTTGAGAGAGAGGATAGATAACCCGCCTCCGCCCTGGGCAGCCTGGTGGGGTGGTGGGAAGGTAGTGGCTTCACTTCCAGTCCCCTCTCTTTACTGAGCCCACCAGCCTGTGGCCACCGTGTTTCAAGGATGATTGGAGGATTGCCAGCCCCAAACAAGAAGTGGCCCTGGCAGGTGAGCCTGCAGACCAGCAACATACACCACTGCGGAGGCTCCCTCATCGACAGGCGCTGGGTGCTCACTGCCGCCCACTGTGTCTTTAG
Seq C2 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549-'0-5,'0-3,8-5
Average complexity
C2
Mappability confidence:
92%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTGGTTCTTGCTTCTT
R:
GTCCCCCTCGTGACCATTTTAC
Band lengths:
353-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains