MmuEX6069405 @ mm10
Exon Skipping
Gene
ENSMUSG00000058398 | Prss43
Description
protease, serine 43 [Source:MGI Symbol;Acc:MGI:2684822]
Coordinates
chr9:110827326-110828785:+
Coord C1 exon
chr9:110827326-110827574
Coord A exon
chr9:110827756-110827915
Coord C2 exon
chr9:110828523-110828785
Length
160 bp
Sequences
Splice sites
3' ss Seq
CACTTTTAATTTCTCTTTAGACA
3' ss Score
7.34
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTGGTACTTACAAACCCAGGGAAGATTCCGGAGTGATGCACCGGCCCCAGAGGCCCCGGAGACCCCGGAGTGACCCAGAGGCCCCGGCACAGCAGAGTCGCTTGAAATCCCTGAGTATTTCGCACCCTTCAGGAGTTCCGGTGTCTGTAGACAGGACTGAGATTCCAGGATCAGGGTCTCCTTCAGGGACCACAACCAAAATTACCTTGGAAAACAGGAGGAGCTCTCTAGGAGGACCGTTTTTTACAG
Seq A exon
ACACTTGCGGCCATAGAATTACAGAGGTAGATCCTGGAAGTTTATCTGCAGGGAGGAAGTGGCCTTGGCAGGTGAGTCTGCAGAGTCAAAATGAGCATGTTTGTGGAGGCTCCCTCATCAGCCACCGATGGGTGTTGACTGCGGCCCACTGCATATATGA
Seq C2 exon
GCAGGAGGAGTACATGGTGATGTTGGGTGACGACATGCTGCATTCTGAATCTGAAAGTGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACTTTGACATTCAAACCATGAGGAATGACATTGCCCTTGCTCTGCTGTACTTCCCCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCCTTCCCGAAGAGCCCTTCCGAGTGAAAAACGGGACAGTGTGCTGGGTGACTGGCTGGGGCCAACAGAACGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058398-'1-10,'1-1,6-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=79.6)
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATCAGGGTCTCCTTCA
R:
TTCACGGGGAAGTACAGCAGA
Band lengths:
244-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types