MmuEX6072096 @ mm10
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:89174197-89175240:+
Coord C1 exon
chr3:89174197-89174291
Coord A exon
chr3:89174945-89175074
Coord C2 exon
chr3:89175158-89175240
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCATCTGCTTTGTTCCTAGAAG
3' ss Score
7.99
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TCCTCCATGATAACAAGTTGACACATACGGACCTCAAACCTGAAAATATTCTGTTTGTGAATTCAGACTACGAACTCACCTACAACCTAGAGAAG
Seq A exon
AAGCGAGATGAGCGCAGTGTAAAGAGCACAGCCGTGCGGGTGGTGGACTTCGGCAGTGCCACCTTTGACCACGAACACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCCCCCGAGGTCATCCTGG
Seq C2 exon
AGTTGGGCTGGTCACAGCCATGCGATGTATGGAGCATAGGCTGCATCATCTTTGAGTACTACGTTGGCTTCACCCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'21-25,'21-20,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(20.7=100)
A:
PF0006920=Pkinase=FE(13.6=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
ENSMUST00000090927fB7845
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCATGATAACAAGTTGACACA
R:
CTGGAAGAGGGTGAAGCCAAC
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types