RnoEX6010273 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188486119-188487171:+
Coord C1 exon
chr2:188486119-188486213
Coord A exon
chr2:188486866-188486995
Coord C2 exon
chr2:188487089-188487171
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCGTCTGCTTGGCTCCTAGAAA
3' ss Score
7.72
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TCCTCCATGATAACAAGTTGACACATACGGACCTCAAACCTGAAAATATTCTGTTTGTGAATTCAGACTACGAACTCACCTACAATCTAGAGAAG
Seq A exon
AAACGAGATGAACGCAGTGTGAAGAGCACAGCTGTGCGGGTGGTGGACTTCGGCAGTGCCACCTTTGACCATGAGCACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCCCCAGAAGTCATCCTGG
Seq C2 exon
AGTTGGGCTGGTCACAGCCGTGCGACGTGTGGAGCATAGGCTGTATCATCTTCGAGTACTACGTCGGCTTCACCCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.6=100)
A:
PF0006920=Pkinase=FE(13.6=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCATGATAACAAGTTGACACA
R:
CTGGAAGAGGGTGAAGCCGA
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]