BtaEX6014593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15428977-15430004:+
Coord C1 exon
chr3:15428977-15429071
Coord A exon
chr3:15429692-15429821
Coord C2 exon
chr3:15429922-15430004
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGCTTTGCCTCCTAGAAG
3' ss Score
8.42
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCCTCCATGATAACAAGCTGACACATACGGACCTCAAGCCTGAAAATATTCTGTTTGTGAATTCGGACTATGAGCTCACCTACAACCTAGAGAAG
Seq A exon
AAGCGGGATGAGCGCAGTGTGAAGAGCACAGCTGTGCGGGTAGTAGACTTTGGCAGTGCCACCTTCGACCATGAGCACCATAGTACCATTGTCTCCACCCGCCATTATCGAGCGCCAGAGGTCATTCTTG
Seq C2 exon
AGTTGGGCTGGTCTCAGCCTTGTGATGTGTGGAGTATAGGCTGTATCATCTTCGAATACTATGTTGGCTTCACCCTCTTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-'15-16,'15-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.8=100)
A:
PF0006920=Pkinase=FE(13.6=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCATGATAACAAGCTGACAC
R:
TTGGAAGAGGGTGAAGCCAAC
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]