GgaEX1015761 @ galGal4
Exon Skipping
Gene
ENSGALG00000014632 | CLK2
Description
dual specificity protein kinase CLK2 [Source:RefSeq peptide;Acc:NP_001026497]
Coordinates
JH375217.1:5326-6212:-
Coord C1 exon
JH375217.1:6118-6212
Coord A exon
JH375217.1:5788-5917
Coord C2 exon
JH375217.1:5326-5408
Length
130 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTCTCCCTCACACAGAAG
3' ss Score
9.01
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
TTCTGCATGACAACAAACTCACTCACACTGACCTCAAACCTGAGAACATCCTCTTTGTCAACTCTGACTATGAGCTCACCTATAACCTGGAAAAG
Seq A exon
AAGCGGGATGAGCGCAGTGTGAAGAGCACGGCCATCAGAGTGGTGGATTTTGGCAGTGCCACGTTTGACCACGAGCATCACAGCACAATTGTGTCTACCAGGCACTACCGGGCCCCTGAGGTCATTCTGG
Seq C2 exon
AGCTTGGCTGGAGCCAGCCCTGTGATGTCTGGAGCATCGGCTGCATCATCTTTGAGTATTATGTGGGTTTCACCCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.8=100)
A:
PF0006920=Pkinase=FE(13.6=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCATGACAACAAACTCACTCA
R:
ACCCACATAATACTCAAAGATGATGC
Band lengths:
162-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]