DreEX6043278 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54659935-54660743:-
Coord C1 exon
chr16:54660649-54660743
Coord A exon
chr16:54660099-54660228
Coord C2 exon
chr16:54659935-54660017
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGTGTGTCAGAAG
3' ss Score
7.46
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
TTCTCCATGACAACAAGCTGACCCACACTGACCTGAAGCCGGAGAACATCCTGTTTGTGAGCTCAGACTATAGTGTGCTGTACAACGCAGAGAAG
Seq A exon
AAGCGTGACGAGCGCTCCGTGAACAGCACTGCAGTGAGGATTGTGGATTTCGGCAGCGCCACCTTTGACCACGAGCATCACAGCAGCATCGTCTCCACACGACACTACAGAGCGCCAGAGGTCATTCTGG
Seq C2 exon
AGCTGGGCTGGAGTCAGCCGTGTGACGTCTGGAGTATCGGCTGTATACTGTTTGAGTTCTACTGCGGATACACACTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(9.8=100)
A:
PF0006920=Pkinase=FE(13.6=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCATGACAACAAGCTGACC
R:
CTGGTAGAGTGTGTATCCGCA
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]