MmuEX6072537 @ mm9
Exon Skipping
Gene
ENSMUSG00000015714 | Lass2
Description
LAG1 homolog, ceramide synthase 2 [Source:MGI Symbol;Acc:MGI:1924143]
Coordinates
chr3:95124864-95125308:+
Coord C1 exon
chr3:95124864-95124982
Coord A exon
chr3:95125112-95125169
Coord C2 exon
chr3:95125258-95125308
Length
58 bp
Sequences
Splice sites
3' ss Seq
CACCTGGTTTCCTCTTGCAGCTG
3' ss Score
10.99
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGGAGGTAGACCTTTTGTCACGGCAGAGTGGGCTCTCTGGACGCCAGGTAGAACGCTGGTTCCGCCGCCGCCGCAACCAGGACAGGCCCAGTCTTCTCAAAAAGTTCCGAGAAGCCAG
Seq A exon
CTGGAGATTCACGTATTACCTAATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGAT
Seq C2 exon
AAACCCTGGTTCTATGACTTAAGGAAAGTTTGGGAGGGATATCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015714-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF067897=UPF0258=FE(39.8=100),PF0004624=Homeobox=PD(50.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF067897=UPF0258=PD(18.4=90.0),PF0379811=TRAM_LAG1_CLN8=FE(21.3=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTGTCACGGCAGAGTG
R:
CCCTCCCAAACTTTCCTTAAGTCA
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: