DreEX0021056 @ danRer10
Exon Skipping
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1362401-1365109:+
Coord C1 exon
chr16:1362401-1362519
Coord A exon
chr16:1362685-1362742
Coord C2 exon
chr16:1365059-1365109
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTGTTCTTTTATAGCTG
3' ss Score
11.25
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGTTCAGTGGAGAAGCTGAGCAAGCAGACGGGATGGACAGAGCGGCAGGTCCAGCGCTGGTTCAGACGCCGCAGAAATCAAGACAGACCAAACCTGCTGAAGAAGTTCTGCGAGGCCAG
Seq A exon
CTGGAGATTCGCCTTTTATCTTCTGGCCTTCATCGGTGGTCTTGCTGCATTAATAGAT
Seq C2 exon
AAACCCTGGTTATATGATTTAGAAGAGATGTGGAAAGGGTTTCCCACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(58.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGACGGGATGGACAGAG
R:
GAAACCCTTTCCACATCTCTTCT
Band lengths:
141-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]