GgaEX1000064 @ galGal3
Exon Skipping
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:75923-83901:-
Coord C1 exon
chr28:83783-83901
Coord A exon
chr28:79318-79375
Coord C2 exon
chr28:75923-75973
Length
58 bp
Sequences
Splice sites
3' ss Seq
ACATCTTTCTTTCTTTGTAGCTG
3' ss Score
11.03
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGTGAGCTGATCAGTTTAGCCAAGCAATGTGACCTGCCAGTGAGAAAAGTGGAGAGGTGGTTTCGGCGCCGGAGGAACACCGACCGACCGAGCCTGTCGAAGAAGTTCTGCGAGGCCTG
Seq A exon
CTGGAGGTTTACGTTTTACATCGTTTCTTTCTTCACTGGGCTGGCTGTACTGTACAAT
Seq C2 exon
AAGCCTTGGCTTTGGGACCATAGAGAGTGCTGGACAGGATACCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAAGCAATGTGACCTGC
R:
GGGTATCCTGTCCAGCACTCT
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]