RnoEX0020316 @ rn6
Exon Skipping
Gene
ENSRNOG00000001072 | Cers4
Description
ceramide synthase 4 [Source:RGD Symbol;Acc:1309303]
Coordinates
chr12:4445926-4447219:-
Coord C1 exon
chr12:4447101-4447219
Coord A exon
chr12:4446766-4446823
Coord C2 exon
chr12:4445926-4445976
Length
58 bp
Sequences
Splice sites
3' ss Seq
AGCTTCCTCCCCTTCTGCAGCTG
3' ss Score
8.61
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACCCAGATGGTCCTCCTGGCTTCCCAGTGTGGCCTCACGTTGCGGCAGATTCAACGCTGGTTCAGGAGACGTCGGAACCAGGATCGGCCTTGCCTGTCCAAGAAATTCTGTGAAGCCAG
Seq A exon
CTGGAGGTTTGTCTTCTATCTGTGTTCCTTCGTGGGTGGCACCTCTATCCTCTACCAT
Seq C2 exon
GAGTCATGGTTGTGGACACCGGCATTGTGCTGGGAGAATTACCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001072_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(60.4=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTCCTCCTGGCTTCC
R:
CGGTGTCCACAACCATGACTC
Band lengths:
136-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]