BtaEX6038515 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003434 | CERS4
Description
Bos taurus ceramide synthase 4 (CERS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001015520]
Coordinates
chr7:18158938-18159875:+
Coord C1 exon
chr7:18158938-18159056
Coord A exon
chr7:18159160-18159217
Coord C2 exon
chr7:18159825-18159875
Length
58 bp
Sequences
Splice sites
3' ss Seq
GGCTCCCTCCCCACCTGCAGCTG
3' ss Score
9.1
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TCCCAGATGAACCTCCTGGCCACGCAGTGCGGCCTCACGCTGCGGCAGACTCAGTGCTGGTTCCGGAGACGCCGGAACCAGGACCGGCCCTGCCTGACCAAGAAGTTCTGTGAGTCCAG
Seq A exon
CTGGAAGTTTGTCTTCTATCTGTGCTGCTTCGTCTGTGGAACCATGGTTCTTTATCAC
Seq C2 exon
GAGTCATGGCTGTGGACGCCGGTCAAGTGCTGGGAAAACTACCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003434-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(58.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(14.7=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGATGAACCTCCTGGC
R:
GCGTCCACAGCCATGACTC
Band lengths:
138-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]