RnoEX6010577 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196493269-196493739:+
Coord C1 exon
chr2:196493269-196493387
Coord A exon
chr2:196493542-196493599
Coord C2 exon
chr2:196493689-196493739
Length
58 bp
Sequences
Splice sites
3' ss Seq
CACCTTGCTTCCTCTTGCAGCTG
3' ss Score
11.89
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTGGAGGTAGACCTTTTGTCTCGGCAGAGTGGGCTCTCTGGACGCCAGGTAGAACGTTGGTTCCGCCGCCGCCGCAACCAGGACAGGCCCAGTCTTCTCAAGAAGTTCCGAGAAGCCAG
Seq A exon
CTGGAGATTCACATATTACCTCATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGAT
Seq C2 exon
AAACCCTGGTTCTATGACTTGAGGAAAGTTTGGGAAGGATATCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'15-10,'15-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGTCTCGGCAGAGTGGG
R:
TCCTCAAGTCATAGAACCAGGGT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]