MmuEX6073830 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122044443-122052995:+
Coord C1 exon
chr3:122044443-122044612
Coord A exon
chr3:122048518-122048644
Coord C2 exon
chr3:122052902-122052995
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATGTGGAATTTCTCCCTAGGGC
3' ss Score
8.17
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
AGGACACAGCGGGCTGAGCTGGACGTGGTCCTAGCGGCCTTTGTGTCCGGTGCTTGCCTGAGCCCCAGCTCGGGGTGATTCTCCCGGTGCTGGGGTGGTCCGGCATGGGCTTCCTCAGACAGATACAGCTTTTGCTTTGGAAGAACTGGACTCTGAGGAAAAGGCAGAAG
Seq A exon
GGCATGCCTGTGTACACTTGAGCAGCAAGGGTAATGCCCTTCTGGGCTGGTGGTACTGATTCTGGGGGAGAGGAAGAGGCTGCGAGGAGGACCCACCTGCCTCTGCTAGTCGGAGAATGAATGGCAG
Seq C2 exon
ATTCGCTTTGTAGTGGAACTCGTGTGGCCTTTGTCTTTGTTTTTGGTGTTAATCTGGCTGAGGAATGCCAACCCACTCTATAGTCAGCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACAGCGGGCTGAG
R:
GAGTGGGTTGGCATTCCTCAG
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types