Special

ENSMUSG00000028125 @ mm10

Biotype
protein_coding
Gene Symbol
Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122044443-122180123:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
124
chr3:122157835-122157958
+
93.2
63.25
0
Exon Skipping
170
chr3:122147730-122147899
+
99.98
0.21
1
Exon Skipping
75
chr3:122147431-122147505
+
99.95
0.37
1
Exon Skipping
106
chr3:122147198-122147303
+
99.56
3.44
1
Exon Skipping
95
chr3:122141691-122141785
+
100
0
1
Exon Skipping
187
chr3:122138424-122138610
+
99.94
0.78
1
Exon Skipping
198
chr3:122087294-122087491
+
99.85
1.76
1
Exon Skipping
117
chr3:122086559-122086675
+
100
0
2
Exon Skipping
140
chr3:122055318-122055457
+
100
0
1
Exon Skipping
142
chr3:122054192-122054333
+
99.97
0.31
1
Exon Skipping
127
chr3:122048518-122048644
+
6.42
9.51
0
Intron Retention
3309
chr3:122116721-122120029
+
4.54
20.31
0
Intron Retention
561
chr3:122126261-122126821
+
16.57
60.01
0
Intron Retention
127
chr3:122147304-122147430
+
5.29
40.26
0
Intron Retention
945
chr3:122155393-122156337
+
4.84
49.19
0
Intron Retention
2757
chr3:122171022-122173778
+
12.3
43.83
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000198691 ABCA4 1-to-1
Human hg19 ENSG00000198691 ABCA4 1-to-1
Rat rn6 ENSRNOG00000012892 Abca4 1-to-1
Chicken galGal4 ENSGALG00000005752 ABCA4 1-to-1
Chicken galGal3 ENSGALG00000005752 F1N8D7_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000057169 abca4a 1-to-2
Zebrafish danRer10 ENSDARG00000062661 abca4b 1-to-2
Fruitfly dm6 FBgn0028539 CG31731 6-to-2
Fruitfly dm6 FBgn0083956 CG34120 6-to-2