MmuEX6073800 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122143400-122147505:+
Coord C1 exon
chr3:122143400-122143432
Coord A exon
chr3:122147198-122147303
Coord C2 exon
chr3:122147431-122147505
Length
106 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCTACTGCCTTGTAGGTA
3' ss Score
8.83
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
Seq A exon
GTATGGAGGAATTTCCATCGGAGGAAAACTCCCTGCTATCCCCATCAGCGGGGAAGCACTTGTTGGCTTTCTAAGTGGCCTTGGCCAGATGATGAACGTGAGCGGG
Seq C2 exon
GGTCCTGTCACCAGGGAGGCCTCCAAAGAAATGTTAGATTTCCTCAAACATCTTGAAACCACAGACAACATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'62-63,'62-62,63-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(10.9=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAAGAGCAAATTCTGGGTCA
R:
TAATGTTGTCTGTGGTTTCAAGATGT
Band lengths:
106-212
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000567; ELM sequence: MNVSGG; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types