RnoEX0004868 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225747150-225752004:+
Coord C1 exon
chr2:225747150-225747182
Coord A exon
chr2:225751692-225751797
Coord C2 exon
chr2:225751930-225752004
Length
106 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTCACTGCCTTGTAGGTA
3' ss Score
8.73
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
Seq A exon
GTATGGAGGAATTTCCATTGGAGGGAAGCTCCCTGACATCCCCATCAGCGGGGAAGCACTTGTGGGCTTCTTAAGTGACCTGGGCCAGATGATGAATGTGAGCGGG
Seq C2 exon
GGTCCTGTCACCAGAGAGTCTTCCAGAGAGATGTTAGATTTCCTCAAACACCTCGAAACCAAAGACAACATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'47-48,'47-47,49-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(14.3=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAAAGAGCAAATTCTGGGTCA
R:
TAATGTTGTCTTTGGTTTCGAGGTG
Band lengths:
106-212
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000567; ELM sequence: MNVSGG; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]