RnoEX0004869 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225751692-225752402:+
Coord C1 exon
chr2:225751692-225751797
Coord A exon
chr2:225751930-225752004
Coord C2 exon
chr2:225752233-225752402
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTGCATTGTTCAAGGGT
3' ss Score
5.67
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTATGGAGGAATTTCCATTGGAGGGAAGCTCCCTGACATCCCCATCAGCGGGGAAGCACTTGTGGGCTTCTTAAGTGACCTGGGCCAGATGATGAATGTGAGCGGG
Seq A exon
GGTCCTGTCACCAGAGAGTCTTCCAGAGAGATGTTAGATTTCCTCAAACACCTCGAAACCAAAGACAACATTAAG
Seq C2 exon
GTGTGGTTTAACAACAAGGGCTGGCATGCCCTGGTCAGCTTCCTGAACGTGGCTCACAACGCCATCTTGCGGGCCAGCCTGCCCAAGGACAGGGACCCGGAAGAATATGGAATCACCGTTATCAGCCAGCCTCTGAACCTGACCAAGGAGCAGCTCTCAGAGATCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'49-49,'49-48,50-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(14.3=84.0)
C2:
PF126982=ABC2_membrane_3=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGGGCCAGATGATGAA
R:
TGCTCCTTGGTCAGGTTCAGA
Band lengths:
183-258
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000567; ELM sequence: MNVSGG; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]