GgaEX6044191 @ galGal3
Exon Skipping
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14415948-14416863:+
Coord C1 exon
chr8:14415948-14416053
Coord A exon
chr8:14416161-14416235
Coord C2 exon
chr8:14416694-14416863
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTGTTTTATTTTAGGGA
3' ss Score
12.12
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTATGGAGGAATTTCTATAGGAGGAAAGCTTCCCGTCCTTCATGTTTCTGGAGATGAAGTTGTCAATTTTTTAAGTAATCTGGGCCGAATGATGAATGTCACAGGA
Seq A exon
GGACAAACTTCACTGGCTGCTGCTAAAGAATTTTCTAATTTCCTTAAATACATGGAAACTGAAGATAATATTAAG
Seq C2 exon
GTGTGGTTTAACAATAAAGGCTGGCACGCTATGGTTAGTTTCCTTAACGTAGCCAATAATGCAATCCTTAGAGCTAGTCTGAGGACTGGCCAAGCCCCTGAGGAGTATGGGATCACTGCTGTAAACCATCCTCTGAACCTCACTAAGGAACAGCTCTCTGAAGTCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(7.0=63.9)
A:
PF126982=ABC2_membrane_3=FE(7.3=100)
C2:
PF126982=ABC2_membrane_3=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCCTTCATGTTTCTGGA
R:
ATACTCCTCAGGGGCTTGGC
Band lengths:
183-258
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000567; ELM sequence: MNVSGG; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]