GgaEX0008083 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12664979-12666392:+
Coord C1 exon
chr8:12664979-12665011
Coord A exon
chr8:12666105-12666210
Coord C2 exon
chr8:12666318-12666392
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTACTGTTTCTCTTCATTAGGTA
3' ss Score
10.35
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
Exon sequences
Seq C1 exon
CTTGAAGAGCAAATACTGGGTCAATGAGCAAAG
Seq A exon
GTATGGAGGAATTTCTATAGGAGGAAAGCTTCCCGTCCTTCATGTTTCTGGAGATGAAGTTGTCAATTTTTTAAGTAATCTGGGCCGAATGATGAATGTCACAGGA
Seq C2 exon
GGACAAACTTCACTGGCTGCTGCTAAAGAATTTTCTAATTTCCTTAAATACATGGAAACTGAAGATAATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(7.0=63.9)
C2:
PF126982=ABC2_membrane_3=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000567; ELM sequence: MNVSGG; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]