MmuEX6073803 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122137570-122141785:+
Coord C1 exon
chr3:122137570-122137668
Coord A exon
chr3:122138424-122138610
Coord C2 exon
chr3:122141691-122141785
Length
187 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTCATTTTCCATGAGGGA
3' ss Score
-9.62
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CATGGACGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTCTGAACAGGCCAGGCTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
Seq A exon
GGAGTACCCATGCATTAATGCAACCTCCTGGAAGACGCCCTCCGTGTCCCCGAACATCACCCACCTGTTCCAGAAGCAGAAATGGACAGCAGCCCACCCCTCTCCCTCCTGCAAGTGCAGCACCAGAGAGAAGCTCACCATGTTGCCCGAGTGCCCCGAGGGTGCTGGAGGGCTCCCACCCCCACAG
Seq C2 exon
AGGACACAGCGCAGCACTGAAGTCCTACAAGACCTCACGAACAGGAACATCTCCGACTACTTGGTAAAAACGTACCCTGCTCTCATAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'58-59,'58-55,59-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.206 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACGAACCCAACAATGA
R:
CTGCTTCTTATGAGAGCAGGGT
Band lengths:
194-381
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000565; ELM sequence: PNITQL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types