GgaEX6044194 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12655665-12664045:+
Coord C1 exon
chr8:12655665-12655763
Coord A exon
chr8:12661673-12661862
Coord C2 exon
chr8:12663951-12664045
Length
190 bp
Sequences
Splice sites
3' ss Seq
AAGACTCCTCCTCTACACAGGAA
3' ss Score
7.41
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
CAATGAGCGTCCTGGCAGTGAGCAGATGGTCTCCCTCACTAATGCTTTCTTAAATAAACCTGGATTTGGAAATCGCTGCTTGAAGAATCAGCCACTTCT
Seq A exon
GAACTTCCCATGCAATAATTCGCCTACTGCCTGGTATATACCTGCTGTTCATCCTAAGCTCAGCAGCCTCCTGCTGAGTCAAAAGTGGAGCTCTGAGAATCCTTCACCTTCCTGCAAGTGCAGCACTCACAAGAAACTCACTATGCTGCCGGAATGCCCTCCAGGAGCTGGAGGCCTCCCACCACCACAG
Seq C2 exon
AGAGTGCAGCACAGCACAGAAATACTTCAAGATCTCACTCACAGAAATATCTCAGATTTTCTGGTGAAAACGTATCCCATGTTGATAAAAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'34-36,'34-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.203 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGCGTCCTGGCAGTG
R:
CTCCCTTTTATCAACATGGGATACGT
Band lengths:
194-384
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000565; ELM sequence: PNITQL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]