DreEX6095552 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28545877-28549496:+
Coord C1 exon
chr24:28545877-28545975
Coord A exon
chr24:28548333-28548522
Coord C2 exon
chr24:28549402-28549496
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCCAATCTTGTTTCCCACAGAGA
3' ss Score
9.62
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TAATGAGCAGATGCAAAGCCCAGACATGAGGTATTTTGGCGAAGTTCTTTTAAACAGACCTGGATTTGGGACCCGATGTATGGTGGATGAACCTCTTGA
Seq A exon
AGAATATCCATGTAATAACATTACCACAGAGTGGGAGATGCCCCTGGTGAACCCGATGCTCATTGAGATGTTGAGCAACTCAGAGTGGACGGACATCAGTCCTTCTCCCAGCTGCCAGTGCAGCACGCCAAACAAACTCACCATGTTACCTGTGTGTCCAGAAGGTGCTGGAGGTCTTCCTCCTCCACAG
Seq C2 exon
AGGATTCAGTCCACTGGTGACATGTTGATGGATCTTACAGGCAGGAACATCTCTGATTATTTAGTGAAGACGTACCCAAACTTAATACGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAGCAGATGCAAAGCCCA
R:
CTAGTCCGTATTAAGTTTGGGTACGT
Band lengths:
194-384
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000565; ELM sequence: PNITQL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]