BtaEX6016504 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49648904-49652804:+
Coord C1 exon
chr3:49648904-49649002
Coord A exon
chr3:49649791-49649977
Coord C2 exon
chr3:49652710-49652804
Length
187 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTGTCTTCCATGAGGGA
3' ss Score
-9.91
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CATGGACCAGCTGGACAGTGAATGGCTCTCAGCACTTGCAGATGTCCTTGTGAATAAGCCAGGCTTTGGCAACCGCTGCCTGAAGGAAGAGTGGCTTCC
Seq A exon
GGAGTTCCCCTGTGGAAATTCAAGCCCCTGGAAGACTCCATCTGTGTCCCCGGATGTCACCCACTTGCTCCAACAGCAGAAATGGACAGCGGACCAACCTTCACCTTCCTGCAGGTGCAGCACCAGAGAGAAGCTCACCATGCTTCCTGAGTGCCCTGAGGGCGCAGGGGGCCTCCCACCCCCGCAG
Seq C2 exon
AGAATACAACGCAGCACTGAAATTCTGCAGGACCTTACAGACAGGAATGTCTCCGACTTCCTGGTAAAAACATATCCTGCTCTTATCCGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'37-30,'37-29,38-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.254 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACCAGCTGGACAGTGA
R:
CTGCTTCGGATAAGAGCAGGA
Band lengths:
194-381
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000565; ELM sequence: PNITQL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]