RnoEX0004880 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225741231-225745455:+
Coord C1 exon
chr2:225741231-225741329
Coord A exon
chr2:225742033-225742219
Coord C2 exon
chr2:225745361-225745455
Length
187 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCATTTTCCATGAGGGA
3' ss Score
-9.61
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
CATGGATGAACCCAACAATGAACACCTTGAAGTACTGGCAGATGTCCTTTTGAACAGGCCAGGTTTTGGCAACCGTTGTCTAAAGGAAGAGTGGCTTCC
Seq A exon
GGAGTACCCCTGCGGCAACGCAACCTCCTGGAAGACGCCTTCCGTGTCCCCAAACATCACCCACCTGTTCCAGAAGCAGAAATGGACAGCAGCCCACCCTTCGCCCGCCTGCAAGTGCAGCACCAGAGAGAAGCTCATCATGCTCCCCGAATGCCCCGAGGGTGCTGGGGGGCTCCCACCCCCACAG
Seq C2 exon
AGGATACAGCGCAGCACAGAAGTCCTACAAGACCTCACGAACAGGAACATCTCTGACTACTTGGTAAAAACGTATCCTGCTCTCATACGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGAACCCAACAATGAACA
R:
CTGCTTCGTATGAGAGCAGGA
Band lengths:
194-381
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000565; ELM sequence: PNITQL; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]