RnoEX0004867 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225742033-225747182:+
Coord C1 exon
chr2:225742033-225742219
Coord A exon
chr2:225745361-225745455
Coord C2 exon
chr2:225747150-225747182
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTCTCTTTGCCCCAGAGG
3' ss Score
9.82
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAGTACCCCTGCGGCAACGCAACCTCCTGGAAGACGCCTTCCGTGTCCCCAAACATCACCCACCTGTTCCAGAAGCAGAAATGGACAGCAGCCCACCCTTCGCCCGCCTGCAAGTGCAGCACCAGAGAGAAGCTCATCATGCTCCCCGAATGCCCCGAGGGTGCTGGGGGGCTCCCACCCCCACAG
Seq A exon
AGGATACAGCGCAGCACAGAAGTCCTACAAGACCTCACGAACAGGAACATCTCTGACTACTTGGTAAAAACGTATCCTGCTCTCATACGAAGCAG
Seq C2 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'42-46,'42-45,44-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGTGTCCCCAAACATCAC
R:
TGTTCATTGACCCAGAATTTGCT
Band lengths:
178-273
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000566; ELM sequence: RNISDF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]