BtaEX6016503 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49649791-49654326:+
Coord C1 exon
chr3:49649791-49649977
Coord A exon
chr3:49652710-49652804
Coord C2 exon
chr3:49654294-49654326
Length
95 bp
Sequences
Splice sites
3' ss Seq
CAGATATGTCCTTGCTTCAGAGA
3' ss Score
5.47
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAGTTCCCCTGTGGAAATTCAAGCCCCTGGAAGACTCCATCTGTGTCCCCGGATGTCACCCACTTGCTCCAACAGCAGAAATGGACAGCGGACCAACCTTCACCTTCCTGCAGGTGCAGCACCAGAGAGAAGCTCACCATGCTTCCTGAGTGCCCTGAGGGCGCAGGGGGCCTCCCACCCCCGCAG
Seq A exon
AGAATACAACGCAGCACTGAAATTCTGCAGGACCTTACAGACAGGAATGTCTCCGACTTCCTGGTAAAAACATATCCTGCTCTTATCCGAAGCAG
Seq C2 exon
TTTGAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'38-31,'38-30,39-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTCCATCTGTGTCCCCG
R:
TGACCCAGAATTTGCTCTTCA
Band lengths:
179-274
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000566; ELM sequence: RNISDF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]