GgaEX6044193 @ galGal3
Exon Skipping
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14411516-14414854:+
Coord C1 exon
chr8:14411516-14411705
Coord A exon
chr8:14413794-14413888
Coord C2 exon
chr8:14414822-14414854
Length
95 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTTTTTTTCTAGAGA
3' ss Score
8.37
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAACTTCCCATGCAATAATTCGCCTACTGCCTGGTATATACCTGCTGTTCATCCTAAGCTCAGCAGCCTCCTGCTGAGTCAAAAGTGGAGCTCTGAGAATCCTTCACCTTCCTGCAAGTGCAGCACTCACAAGAAACTCACTATGCTGCCGGAATGCCCTCCAGGAGCTGGAGGCCTCCCACCACCACAG
Seq A exon
AGAGTGCAGCACAGCACAGAAATACTTCAAGATCTCACTCACAGAAATATCTCAGATTTTCTGGTGAAAACGTATCCCATGTTGATAAAAGGGAG
Seq C2 exon
CTTGAAGAGCAAATACTGGGTCAATGAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCATCCTAAGCTCAGCA
R:
TGCTCATTGACCCAGTATTTGCT
Band lengths:
177-272
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000566; ELM sequence: RNISDF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]