MmuEX6073802 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122138424-122143432:+
Coord C1 exon
chr3:122138424-122138610
Coord A exon
chr3:122141691-122141785
Coord C2 exon
chr3:122143400-122143432
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTTCTTTGCCCCAGAGG
3' ss Score
9.79
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAGTACCCATGCATTAATGCAACCTCCTGGAAGACGCCCTCCGTGTCCCCGAACATCACCCACCTGTTCCAGAAGCAGAAATGGACAGCAGCCCACCCCTCTCCCTCCTGCAAGTGCAGCACCAGAGAGAAGCTCACCATGTTGCCCGAGTGCCCCGAGGGTGCTGGAGGGCTCCCACCCCCACAG
Seq A exon
AGGACACAGCGCAGCACTGAAGTCCTACAAGACCTCACGAACAGGAACATCTCCGACTACTTGGTAAAAACGTACCCTGCTCTCATAAGAAGCAG
Seq C2 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'55-64,'55-59,61-64=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.281 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACATCACCCACCTGTTCC
R:
TGTTCATTGACCCAGAATTTGCT
Band lengths:
167-262
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000566; ELM sequence: RNISDF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types