RnoALTD0001228-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225745361-225747182:+
Coord C1 exon
chr2:225745361-225745455
Coord A exon
chr2:225745456-225745585
Coord C2 exon
chr2:225747150-225747182
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GATTTTATTTTGACTTTCAGCTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
AGGATACAGCGCAGCACAGAAGTCCTACAAGACCTCACGAACAGGAACATCTCTGACTACTTGGTAAAAACGTATCCTGCTCTCATACGAAGCAG
Seq A exon
GTAGGTGACCCAGTCACACCTGTAATCTTGGCTGCCAAGACAACATCAACCATGCCAGAGTCAGTTTCCTACTGTTGACTTGAGGGTGGCAGTTGAGTGTGATGGTCTCACAGCAGAAGAAATAACCGAG
Seq C2 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-44-46,45-46-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCACAGAAGTCCTACAA
R:
TGTTCATTGACCCAGAATTTGCT
Band lengths:
116-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]