RnoALTD0001228-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225745361-225747182:+
Coord C1 exon
chr2:225745361-225745455
Coord A exon
NA
Coord C2 exon
chr2:225747150-225747182
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GATTTTATTTTGACTTTCAGCTT
3' ss Score
7.99
Exon sequences
Seq C1 exon
AGGATACAGCGCAGCACAGAAGTCCTACAAGACCTCACGAACAGGAACATCTCTGACTACTTGGTAAAAACGTATCCTGCTCTCATACGAAGCAG
Seq A exon
NA
Seq C2 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-44-46,45-46-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCACAGAAGTCCTACAA
R:
TGTTCATTGACCCAGAATTTGCT
Band lengths:
116-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]