MmuALTD1014775-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122141693-122143432:+
Coord C1 exon
chr3:122141693-122141753
Coord A exon
chr3:122141754-122141785
Coord C2 exon
chr3:122143400-122143432
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GATTTTATTTTGGTTTGCAGCTT
3' ss Score
8.02
Exon sequences
Seq C1 exon
GACACAGCGCAGCACTGAAGTCCTACAAGACCTCACGAACAGGAACATCTCCGACTACTTG
Seq A exon
GTAAAAACGTACCCTGCTCTCATAAGAAGCAG
Seq C2 exon
CTTAAAGAGCAAATTCTGGGTCAATGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-60-61,61-61-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCACTGAAGTCCTACAA
R:
TGTTCATTGACCCAGAATTTGCT
Band lengths:
84-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types